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    LOC4346999 TPR repeat-containing thioredoxin TDX-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346999, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346999
    Gene description
    TPR repeat-containing thioredoxin TDX-like
    Locus tag
    OSNPB_090401200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsTDX; OsTrx26
    Expression
    Ubiquitous expression in mature seeds (RPKM 56.2), flower buds (RPKM 30.8) and 6 other tissues See more
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    Genomic context

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    See LOC4346999 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18418097..18422974, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14047895..14053565, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936334 Neighboring gene transcription factor MYB20 Neighboring gene ABC transporter G family member STR Neighboring gene protein TIFY 6b-like Neighboring gene plant UBX domain-containing protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp70 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tPR repeat-containing thioredoxin TDX
    Names
    LOC_Os09g23650
    P0650H04.34
    TPR repeat-containing thioredoxin TDX
    Tetratricoredoxin
    putative tetratricoredoxin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403753.1 → NP_001390682.1  tPR repeat-containing thioredoxin TDX

      Status: VALIDATED

      Source sequence(s)
      AK063980, CI047260, CI204955, CI303841, CI674927
      UniProtKB/Swiss-Prot
      Q6ES52
      UniProtKB/TrEMBL
      B9G3G7

    2. NM_001403754.1 → NP_001390683.1  tPR repeat-containing thioredoxin TDX

      Status: VALIDATED

      Source sequence(s)
      AK063980, AK106846, AP014965, CI303841, CI674927
      UniProtKB/Swiss-Prot
      Q6ES52
      UniProtKB/TrEMBL
      B9G3G7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18418097..18422974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757134.3 → XP_015612620.1  tPR repeat-containing thioredoxin TDX isoform X1

      UniProtKB/Swiss-Prot
      Q6ES52
      UniProtKB/TrEMBL
      B9G3G7
      Conserved Domains (3) summary
      PLN03088
      Location:56 → 191
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      cd02947
      Location:217 → 312
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
      sd00006
      Location:50 → 78
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ES52.1 GenPept UniProtKB/Swiss-Prot:Q6ES52

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