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    LOC4331334 probable glucuronosyltransferase Os03g0107900 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331334, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331334
    Gene description
    probable glucuronosyltransferase Os03g0107900
    Locus tag
    OSNPB_030107900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_09104
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 6.2), leaves after flowering (RPKM 5.2) and 6 other tissues See more
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    Genomic context

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    See LOC4331334 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (486538..489370)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (479173..482010)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent protein kinase inhibitor EL2-like Neighboring gene phosphoglucan phosphatase DSP4, amyloplastic Neighboring gene arsenate reductase 2.2-like Neighboring gene uncharacterized LOC9271783

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucuronoxylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glucuronosyltransferase Os03g0107900
    Names
    LOC_Os03g01760

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423906.1 → NP_001410835.1  probable glucuronosyltransferase Os03g0107900

      Status: VALIDATED

      Source sequence(s)
      AK109533, AP014959, CI110823
      UniProtKB/Swiss-Prot
      A0A0P0VSC3, Q10SX7
      UniProtKB/TrEMBL
      A2XBK6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      486538..489370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10SX7.1 GenPept UniProtKB/Swiss-Prot:Q10SX7

    Gene LinkOut

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