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    LOC4327659 SNF1-related protein kinase regulatory subunit gamma-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327659, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327659
    Gene description
    SNF1-related protein kinase regulatory subunit gamma-1-like
    Locus tag
    OSNPB_010586600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 23.9), flower buds (RPKM 23.2) and 6 other tissues See more
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    Genomic context

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    See LOC4327659 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (23394208..23397124, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22820220..22823169, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 1-like Neighboring gene amino acid transporter AVT1I Neighboring gene WRKY transcription factor 72B Neighboring gene plant cysteine oxidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    SNF1-related protein kinase regulatory subunit gamma-1-like
    Names
    Os01g0586600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      23394208..23397124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755112.2 → XP_015610598.1  SNF1-related protein kinase regulatory subunit gamma-1-like

      UniProtKB/TrEMBL
      A2WRX6, Q0JLN6
      Conserved Domains (3) summary
      COG0517
      Location:206 → 334
      CBS; CBS domain [Signal transduction mechanisms]
      cd02205
      Location:289 → 417
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
      pfam00571
      Location:48 → 110
      CBS; CBS domain

    2. XM_015755759.2 → XP_015611245.1  SNF1-related protein kinase regulatory subunit gamma-1-like

      UniProtKB/TrEMBL
      A2WRX6, Q0JLN6
      Conserved Domains (3) summary
      COG0517
      Location:206 → 334
      CBS; CBS domain [Signal transduction mechanisms]
      cd02205
      Location:289 → 417
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
      pfam00571
      Location:48 → 110
      CBS; CBS domain
    Nucleotide Protein
    Heading Accession and Version

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