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    LOC4348060 caffeoylshikimate esterase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348060, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348060
    Gene description
    caffeoylshikimate esterase
    Locus tag
    OSNPB_100135600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 35.7), roots after flowering (RPKM 33.5) and 6 other tissues See more
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    Genomic context

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    See LOC4348060 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (2209701..2214714)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (2201497..2206783)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348058 Neighboring gene uncharacterized LOC4348059 Neighboring gene uncharacterized LOC107278360 Neighboring gene small nucleolar RNA Z247 Neighboring gene disease resistance protein RPM1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoylshikimate esterase
    Names
    Os10g0135600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      2209701..2214714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759009.3 → XP_015614495.1  caffeoylshikimate esterase

      UniProtKB/TrEMBL
      A0A5S6RBF8, A0A8J8Y2K5, B8BFM6, B9G7F1, Q0IZ30, Q33B71
      Conserved Domains (1) summary
      PLN02385
      Location:24 → 365
      PLN02385; hydrolase; alpha/beta fold family protein
    Nucleotide Protein
    Heading Accession and Version

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