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    LOC4336202 very-long-chain 3-oxoacyl-CoA reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336202, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336202
    Gene description
    very-long-chain 3-oxoacyl-CoA reductase 1
    Locus tag
    OSNPB_040483500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 25.3), flowers (RPKM 24.2) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24672374..24675679, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24175637..24178971, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized membrane protein At3g27390 Neighboring gene uncharacterized LOC4336201 Neighboring gene uncharacterized LOC107277960 Neighboring gene uncharacterized LOC4336203 Neighboring gene uncharacterized LOC112938772

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Wax crystal-sparse leaf 3 encoding a β-ketoacyl-CoA reductase is involved in cuticular wax biosynthesis in rice. Gan L, et al. Plant Cell Rep, 2016 Aug. PMID 27106031
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ketoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain 3-oxoacyl-CoA reductase 1
    Names
    Os04g0483500
    wax crystal-sparse leaf 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      24672374..24675679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778168.3 → XP_015633654.1  very-long-chain 3-oxoacyl-CoA reductase 1

      UniProtKB/TrEMBL
      A3AUZ5, Q01IG3, Q7XQF8
      Conserved Domains (1) summary
      PLN02780
      Location:1 → 316
      PLN02780; ketoreductase/ oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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