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    LOC4343275 nucleoside diphosphate kinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343275, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343275
    Gene description
    nucleoside diphosphate kinase 1-like
    Locus tag
    OSNPB_070492000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NDKR; OsNDPK1; OsJ_023347; OJ1218_C12.24
    Expression
    Ubiquitous expression in flowers (RPKM 871.2), flower buds (RPKM 684.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343275 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18560288..18562796, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18335058..18337495, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 716B1 Neighboring gene monooxygenase 2 Neighboring gene ATP-dependent DNA helicase SRS2-like protein At4g25120 Neighboring gene ubiquitin-ribosomal protein eL40 fusion protein Neighboring gene uncharacterized LOC107281778

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of nucleoside diphosphate kinase required for coleoptile elongation in rice (Oryza sativa L.). Huang JY, et al. J Struct Biol, 2005 Jun. PMID 15890279
    2. Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens. Cho SM, et al. Mol Cells, 2004 Dec 31. PMID 15650338
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Crystal structure of nucleoside diphosphate kinase required for coleoptile elongation in rice
      Title: Crystal structure of nucleoside diphosphate kinase required for coleoptile elongation in rice (Oryza sativa L.).
    2. OsNDPK1 expression in rice plants is enhanced upon infection with bacterial pathogens
      Title: Enhanced expression of a gene encoding a nucleoside diphosphate kinase 1 (OsNDPK1) in rice plants upon infection with bacterial pathogens.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleoside diphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in GTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in UTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoside diphosphate kinase 1
    Names
    LOC_Os07g30970
    NDK I
    NDP kinase I
    NDPK I
    NUCLEOSIDE DIPHOSPHATE KINASE I
    P0038F10.104
    NP_001389989.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403060.1 → NP_001389989.1  nucleoside diphosphate kinase 1

      Status: VALIDATED

      Source sequence(s)
      CF279435, CF331261
      UniProtKB/Swiss-Prot
      A0A0P0X6I2, A2YLG5, A6N037, A6N0M9, Q07661, Q0D6C7, Q6DQV1, Q6ZHK3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18560288..18562796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07661.1 GenPept UniProtKB/Swiss-Prot:Q07661

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