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    LOC4346980 uncharacterized LOC4346980 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346980, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4346980
    Gene description
    uncharacterized LOC4346980
    Locus tag
    OSNPB_090397200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1655_B12.10
    Expression
    Ubiquitous expression in flowers (RPKM 3.6), flower buds (RPKM 3.0) and 6 other tissues See more
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    Genomic context

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    See LOC4346980 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13854707..13856542)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene vacuolar iron transporter 1.2-like Neighboring gene uncharacterized LOC4346979 Neighboring gene alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 Neighboring gene protein trichome birefringence-like 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346980
    Names
    Os09g0397200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13854707..13856542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755454.1 → XP_015610940.1  uncharacterized protein LOC4346980

      UniProtKB/TrEMBL
      A0A0P0XMX8, B7F8V6, B8BF83, B9G3F3, Q0J231, Q6ERE2
    Nucleotide Protein
    Heading Accession and Version

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