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    LOC4351993 uncharacterized LOC4351993 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351993, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351993
    Gene description
    uncharacterized LOC4351993
    Locus tag
    OSNPB_120285100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Ptr
    Expression
    Broad expression in leaves before flowering (RPKM 106.2), roots after flowering (RPKM 102.3) and 5 other tissues See more
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    Genomic context

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    See LOC4351993 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10883882..10895100)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10822539..10833752)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267528 Neighboring gene uncharacterized LOC107279765 Neighboring gene xylanase inhibitor protein 2-like Neighboring gene probable Ufm1-specific protease

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance. Zhao H, et al. Nat Commun, 2018 May 23. PMID 29795191, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351993
    Names
    Os12g0285100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      10883882..10895100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764200.3 → XP_015619686.1  uncharacterized protein LOC4351993 isoform X2

      UniProtKB/TrEMBL
      A0A2U9K3S3, B7EV87, Q0INW2

    2. XM_015764201.3 → XP_015619687.1  uncharacterized protein LOC4351993 isoform X2

      UniProtKB/TrEMBL
      A0A2U9K3S3, B7EV87, Q0INW2

    3. XM_066306547.1 → XP_066162644.1  uncharacterized protein LOC4351993 isoform X2

      UniProtKB/TrEMBL
      B7EV87, Q0INW2

    4. XM_015764198.3 → XP_015619684.1  uncharacterized protein LOC4351993 isoform X1

      UniProtKB/TrEMBL
      A0A2U9K3S3, A0A2U9K4Z4, H2KWN0
    Nucleotide Protein
    Heading Accession and Version

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