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    FEN1B flap endonuclease 1-B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334691, updated on 16-Jul-2024

    Summary

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    Gene symbol
    FEN1B
    Gene description
    flap endonuclease 1-B-like
    Locus tag
    OSNPB_030834000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FEN-1b; FEN-1-B; OsFEN-1b; OsJ_13256
    Expression
    Ubiquitous expression in flower buds (RPKM 20.3), flowers (RPKM 16.9) and 6 other tissues See more
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    Genomic context

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    See FEN1B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36019416..36024951)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35046572..35052137)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable polygalacturonase Neighboring gene guanosine deaminase Neighboring gene uncharacterized protein C24B11.05 Neighboring gene uncharacterized LOC107277200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of two flap endonuclease-1 homologues in rice. Kimura S, et al. Gene, 2003 Sep 18. PMID 14527718
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables 5'-flap endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    flap endonuclease 1-B
    Names
    Flap structure-specific endonuclease 1-B
    LOC_Os03g61820
    OSJNBa0096I06.25
    flap endonuclease-1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402318.1 → NP_001389247.1  flap endonuclease 1-B

      Status: VALIDATED

      Source sequence(s)
      AB080084, AK069540, AU033159, CI568112, CI624839
      UniProtKB/Swiss-Prot
      A0A0P0W554, B8AMS4, Q10B10, Q75LI2, Q84UJ7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36019416..36024951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75LI2.1 GenPept UniProtKB/Swiss-Prot:Q75LI2

    Gene LinkOut

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