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    LOC4327273 pectin acetylesterase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327273, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327273
    Gene description
    pectin acetylesterase 3
    Locus tag
    OSNPB_010319000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 3.2), roots before flowering (RPKM 1.4) and 2 other tissues See more
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    Genomic context

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    See LOC4327273 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (12159050..12164778)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (12117107..12123031)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein ABC transporter 1, mitochondrial Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC107276509 Neighboring gene UPF0481 protein At3g47200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectin acetylesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pectin acetylesterase 3
    Names
    B1153F04.18
    Os01g0319000
    P0028G04.42
    putative pectinacetylesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      12159050..12164778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779903.3 → XP_015635389.1  pectin acetylesterase 3

      UniProtKB/TrEMBL
      A0A0P0V272, B8A728, B9EVU1, Q7F1B6, Q94D71
      Conserved Domains (1) summary
      pfam03283
      Location:53 → 401
      PAE; Pectinacetylesterase
    Nucleotide Protein
    Heading Accession and Version

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