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    LOC4343605 myosin-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343605, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343605
    Gene description
    myosin-1
    Locus tag
    OSNPB_070562800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MyoVIIIA1; MyoVIIIA2
    Expression
    Ubiquitous expression in roots before flowering (RPKM 27.2), roots after flowering (RPKM 26.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343605 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22718120..22727723, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22488826..22498445, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene organic cation/carnitine transporter 2 Neighboring gene chlorophyll a-b binding protein of LHCII type III, chloroplastic Neighboring gene uncharacterized LOC4343606 Neighboring gene sphingosine kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification and molecular characterization of myosin gene family in Oryza sativa genome. Jiang S, et al. Plant Cell Physiol, 2004 May. PMID 15169941
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microfilament motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle transport along actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myosin-1
    Names
    Os07g0562800
    myosin heavy chain class VIII A1 protein
    myosin heavy chain class VIII A2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22718120..22727723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791052.3 → XP_015646538.1  myosin-1 isoform X2

      UniProtKB/TrEMBL
      B8B7G2
      Conserved Domains (4) summary
      smart00242
      Location:230 → 905
      MYSc; Myosin. Large ATPases
      cd01383
      Location:249 → 893
      MYSc_Myo8; class VIII myosin, motor domain
      pfam02736
      Location:186 → 222
      Myosin_N; Myosin N-terminal SH3-like domain
      pfam07106
      Location:1029 → 1079
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

    2. XM_015791051.3 → XP_015646537.1  myosin-1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X7H4, B8B7G2
      Conserved Domains (3) summary
      COG1196
      Location:1041 → 1245
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd01383
      Location:249 → 893
      MYSc_Myo8; class VIII myosin, motor domain
      pfam05557
      Location:1041 → 1097
      MAD; Mitotic checkpoint protein
    Nucleotide Protein
    Heading Accession and Version

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