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    LOC4345211 uncharacterized LOC4345211 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345211, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345211
    Gene description
    uncharacterized LOC4345211
    Locus tag
    OSNPB_080299300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 1.4), flower buds (RPKM 0.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (12331401..12334171, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (12256934..12259848, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357547 Neighboring gene triphosphate tunnel metalloenzyme 3 Neighboring gene probable monogalactosyldiacylglycerol synthase 2, chloroplastic Neighboring gene uncharacterized LOC9269009 Neighboring gene agamous-like MADS-box protein AGL29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345211
    Names
    OSJNBa0063H21.121
    Os08g0299300
    P0045D08.102

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      12331401..12334171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793889.3 → XP_015649375.1  uncharacterized protein LOC4345211 isoform X1

      UniProtKB/TrEMBL
      Q6UTZ1

    2. XM_015793890.3 → XP_015649376.1  uncharacterized protein LOC4345211 isoform X2

      UniProtKB/TrEMBL
      A3BRQ6
    Nucleotide Protein
    Heading Accession and Version

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