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    LOC107278650 pseudo histidine-containing phosphotransfer protein 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107278650, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC107278650
    Gene description
    pseudo histidine-containing phosphotransfer protein 5-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PHP5; OsHpt5
    Expression
    Broad expression in leaves before flowering (RPKM 19.7), roots after flowering (RPKM 8.3) and 4 other tissues See more
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    Genomic context

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    See LOC107278650 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26045856..26053215, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25918469..25935345, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene kinesin-like protein KIN-14K Neighboring gene uncharacterized LOC107280995 Neighboring gene uncharacterized LOC4339355

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histidine phosphotransfer kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein histidine kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pseudo histidine-containing phosphotransfer protein 5
    Names
    LOC_Os05g44570
    P0483D07.18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420742.1 → NP_001407671.1  pseudo histidine-containing phosphotransfer protein 5

      Status: VALIDATED

      Source sequence(s)
      AK072664, AK120693, CI330516
      UniProtKB/Swiss-Prot
      A0A0P0WPW1, Q0DGN5, Q6F303

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26045856..26053215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310209.1 → XP_066166306.1  pseudo histidine-containing phosphotransfer protein 5 isoform X1

    2. XM_066310211.1 → XP_066166308.1  pseudo histidine-containing phosphotransfer protein 5 isoform X3

      UniProtKB/TrEMBL
      B7EAU0

    3. XM_066310210.1 → XP_066166307.1  pseudo histidine-containing phosphotransfer protein 5 isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0WPW1, Q0DGN5, Q6F303
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6F303.1 GenPept UniProtKB/Swiss-Prot:Q6F303

    Gene LinkOut

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