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    LOC4341530 transcription factor TGAL8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341530, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4341530
    Gene description
    transcription factor TGAL8-like
    Locus tag
    OSNPB_060614100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TGAL8; OsbZIP49; OsJ_21969; P0691E09.5
    Expression
    Broad expression in roots before flowering (RPKM 7.3), leaves after flowering (RPKM 4.2) and 5 other tissues See more
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    Genomic context

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    See LOC4341530 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25423472..25433591, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24561291..24571412, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272153 Neighboring gene FT-interacting protein 1 Neighboring gene uncharacterized LOC4341531 Neighboring gene uncharacterized LOC9270305

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGAL8
    Names
    LOC_Os06g41100
    P0417G12.29
    Transcription factor TGAL8
    bZIP transcription factor 49
    putative leucine zipper
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421648.1 → NP_001408577.1  transcription factor TGAL8

      Status: VALIDATED

      Source sequence(s)
      AK119909
      UniProtKB/Swiss-Prot
      Q69T21

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25423472..25433591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788513.3 → XP_015643999.1  transcription factor TGAL8 isoform X1

      UniProtKB/TrEMBL
      B8B4L8
      Conserved Domains (3) summary
      cd14686
      Location:159 → 209
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:235 → 308
      DOG1; Seed dormancy control
      cl21462
      Location:158 → 209
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_015788517.3 → XP_015644003.1  transcription factor TGAL8 isoform X3

      UniProtKB/TrEMBL
      B8B4L8
      Conserved Domains (3) summary
      cd14686
      Location:64 → 114
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:140 → 213
      DOG1; Seed dormancy control
      cl21462
      Location:63 → 114
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    3. XM_015788516.3 → XP_015644002.1  transcription factor TGAL8 isoform X2

      UniProtKB/TrEMBL
      B8B4L8
      Conserved Domains (3) summary
      cd14686
      Location:79 → 129
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:155 → 228
      DOG1; Seed dormancy control
      cl21462
      Location:78 → 129
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69T21.1 GenPept UniProtKB/Swiss-Prot:Q69T21

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