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    LOC4329058 phosphatidylinositol 4-kinase gamma 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329058, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329058
    Gene description
    phosphatidylinositol 4-kinase gamma 4-like
    Locus tag
    OSNPB_020290500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1086_G08.5; OJ1756_H07.61
    Expression
    Ubiquitous expression in flowers (RPKM 17.6), flower buds (RPKM 14.0) and 6 other tissues See more
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    Genomic context

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    See LOC4329058 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (11023508..11026835, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10994227..10997642, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329056 Neighboring gene uncharacterized LOC4329057 Neighboring gene uncharacterized LOC4329059 Neighboring gene GDSL esterase/lipase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol 4-kinase gamma 4-like
    Names
    Os02g0290500
    phosphatidylinositol 3- and 4-kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      11023508..11026835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767379.3 → XP_015622865.1  phosphatidylinositol 4-kinase gamma 4-like

      UniProtKB/Swiss-Prot
      Q6K881
      UniProtKB/TrEMBL
      A2X3L6
      Conserved Domains (3) summary
      pfam00240
      Location:45 → 105
      ubiquitin; Ubiquitin family
      pfam00454
      Location:266 → 508
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase
      cl25424
      Location:111 → 185
      TGS; The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information ...
    Nucleotide Protein
    Heading Accession and Version

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