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    LOC4349890 V-type proton ATPase 16 kDa proteolipid subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349890, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349890
    Gene description
    V-type proton ATPase 16 kDa proteolipid subunit-like
    Locus tag
    OSNPB_110169900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    VATP-P1; OsJ_031784
    Expression
    Ubiquitous expression in flowers (RPKM 207.0), flower buds (RPKM 202.0) and 6 other tissues See more
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    Genomic context

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    See LOC4349890 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (3425998..3428277, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (3378052..3380305, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene aldehyde oxidase GLOX Neighboring gene long chain acyl-CoA synthetase 9, chloroplastic Neighboring gene fatty acid amide hydrolase-like Neighboring gene uncharacterized LOC4349892 Neighboring gene filament-like plant protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase 16 kDa proteolipid subunit
    Names
    LOC_Os11g06890
    V-ATPase 16 kDa proteolipid subunit
    Vacuolar proton pump 16 kDa proteolipid subunit
    NP_001410096.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423167.1 → NP_001410096.1  V-type proton ATPase 16 kDa proteolipid subunit

      Status: VALIDATED

      Source sequence(s)
      AK105044
      UniProtKB/Swiss-Prot
      A2ZBW5, B7EXI1, Q0IUB5, Q40635, Q53JH4
      UniProtKB/TrEMBL
      A2ZIG7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      3425998..3428277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IUB5.1 GenPept UniProtKB/Swiss-Prot:Q0IUB5

    Gene LinkOut

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