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    LOC4339355 uncharacterized LOC4339355 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339355, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339355
    Gene description
    uncharacterized LOC4339355
    Locus tag
    OSNPB_050521500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 35.0), roots after flowering (RPKM 14.6) and 6 other tissues See more
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    Genomic context

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    See LOC4339355 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26060449..26065805)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25942411..25947887)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pseudo histidine-containing phosphotransfer protein 5-like Neighboring gene uncharacterized LOC107280995 Neighboring gene probable pectinesterase 53 Neighboring gene uncharacterized LOC107280849

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4A-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339355
    Names
    Os05g0521500
    protein cereblon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26060449..26065805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785299.2 → XP_015640785.1  uncharacterized protein LOC4339355 isoform X1

      UniProtKB/TrEMBL
      B8B010
      Conserved Domains (2) summary
      cd15777
      Location:447 → 547
      CRBN_C_like; Thalidomide-binding C-terminal domain of cereblon (CRBN) and similar protein domains
      pfam02190
      Location:101 → 212
      LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain

    2. XM_015785300.3 → XP_015640786.1  uncharacterized protein LOC4339355 isoform X2

      UniProtKB/TrEMBL
      B8B010, Q0DGN3, Q53WM9
      Conserved Domains (2) summary
      cd15777
      Location:443 → 543
      CRBN_C_like; Thalidomide-binding C-terminal domain of cereblon (CRBN) and similar protein domains
      pfam02190
      Location:97 → 208
      LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain
    Nucleotide Protein
    Heading Accession and Version

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