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    LOC9267894 non-specific lipid-transfer protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267894, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9267894
    Gene description
    non-specific lipid-transfer protein 2
    Locus tag
    OSNPB_110115350
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LTP2-A
    Expression
    Biased expression in flowers (RPKM 149.2), flower buds (RPKM 122.8) and 1 other tissue See more
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    Genomic context

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    See LOC9267894 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (735432..736448)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (693266..694261)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein 4-like Neighboring gene non-specific lipid-transfer protein 3-like Neighboring gene non-specific lipid-transfer protein 1 Neighboring gene uncharacterized LOC9270252

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-specific lipid-transfer protein 2A
    Names
    LOC_Os11g02369
    LTP 2A
    Non-specific lipid-transfer protein 2A
    Os11g0115350
    lipid transfer protein 2B
    lipid transfer protein LPT1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404792.1 → NP_001391721.1  non-specific lipid-transfer protein 2A precursor

      Status: VALIDATED

      Source sequence(s)
      AU032577, AU198212, CB679825, CI296256
      UniProtKB/Swiss-Prot
      A2ZAT0, O22483, Q2RBD4, Q42978, Q42999, Q7XJ39
      UniProtKB/TrEMBL
      A0A1L2JIE4, A0A8U0WP64, A3C7Z3, C7J8G6, V5K422

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      735432..736448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XJ39.2 GenPept UniProtKB/Swiss-Prot:Q7XJ39

    Gene LinkOut

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