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    LOC4346176 retinoblastoma-related protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346176, updated on 5-Nov-2024

    Summary

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    Gene symbol
    LOC4346176
    Gene description
    retinoblastoma-related protein 1-like
    Locus tag
    OSNPB_080538700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Rbr1; OsRBR1; OsJ_002829
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    Genomic context

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    See LOC4346176 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27068784..27074928, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26922189..26928350, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene uncharacterized LOC4346175 Neighboring gene DNA polymerase zeta processivity subunit Neighboring gene probable protein S-acyltransferase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article
    3. RETINOBLASTOMA RELATED 1 switches mitosis to meiosis in rice. Miao Y, et al. Plant Commun, 2024 Jun 10. PMID 38433446, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RETINOBLASTOMA RELATED 1 switches mitosis to meiosis in rice.
      Title: RETINOBLASTOMA RELATED 1 switches mitosis to meiosis in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of G1/S transition of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoblastoma-related protein 1
    Names
    LOC_Os08g42600
    P0666G10.104
    putative Retinoblastoma protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403680.1 → NP_001390609.1  retinoblastoma-related protein 1

      Status: VALIDATED

      Source sequence(s)
      AK241627, AY941774
      UniProtKB/Swiss-Prot
      A0A0P0XI99, A2ZWA7, A9UL15, B7F8C8, Q84QM3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27068784..27074928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793186.3 → XP_015648672.1  retinoblastoma-related protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A2YXJ7
      Conserved Domains (4) summary
      pfam01857
      Location:732 → 859
      RB_B; Retinoblastoma-associated protein B domain
      pfam01858
      Location:419 → 619
      RB_A; Retinoblastoma-associated protein A domain
      pfam08934
      Location:886 → 968
      Rb_C; Rb C-terminal domain
      pfam11934
      Location:97 → 232
      DUF3452; Domain of unknown function (DUF3452)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84QM3.1 GenPept UniProtKB/Swiss-Prot:Q84QM3

    Gene LinkOut

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    Research Materials