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    LOC4342674 uncharacterized LOC4342674 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342674, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342674
    Gene description
    uncharacterized LOC4342674
    Locus tag
    OSNPB_070203700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SPL5
    Expression
    Ubiquitous expression in roots after flowering (RPKM 14.7), leaves before flowering (RPKM 13.1) and 6 other tissues See more
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    Genomic context

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    See LOC4342674 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5643860..5656734, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5567587..5580528, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene rRNA biogenesis protein RRP5 Neighboring gene uncharacterized LOC9269213 Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic Neighboring gene serine/threonine-protein kinase STY46-like Neighboring gene uncharacterized LOC107278126 Neighboring gene ethylene-responsive transcription factor ERN1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U2 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342674
    Names
    Os07g0203700
    Os07g0203800
    P0431A02.16
    putative Splicing factor 3B subunit 3
    splicing factor 3B subunit 3
    spotted leaf 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      5643860..5656734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312346.1 → XP_066168443.1  uncharacterized protein LOC4342674 isoform X6

      UniProtKB/TrEMBL
      B8B885

    2. XM_026026839.2 → XP_025882624.1  uncharacterized protein LOC4342674 isoform X5

      UniProtKB/TrEMBL
      B8B885
      Conserved Domains (2) summary
      pfam10433
      Location:1 → 544
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
      cl26526
      Location:800 → 1175
      CPSF_A; CPSF A subunit region

    3. XM_066312344.1 → XP_066168441.1  uncharacterized protein LOC4342674 isoform X4

      UniProtKB/TrEMBL
      B8B885

    4. XM_015791578.3 → XP_015647064.1  uncharacterized protein LOC4342674 isoform X2

      UniProtKB/TrEMBL
      B8B885, B9FW30, Q7X971
      Conserved Domains (2) summary
      pfam03178
      Location:940 → 1315
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:133 → 684
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    5. XM_066312347.1 → XP_066168444.1  uncharacterized protein LOC4342674 isoform X7

      UniProtKB/TrEMBL
      B8B885

    6. XM_015791579.3 → XP_015647065.1  uncharacterized protein LOC4342674 isoform X3

      UniProtKB/TrEMBL
      B8B885
      Conserved Domains (2) summary
      pfam03178
      Location:951 → 1301
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:133 → 695
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    7. XM_015791577.3 → XP_015647063.1  uncharacterized protein LOC4342674 isoform X1

      UniProtKB/TrEMBL
      B8B885
      Conserved Domains (2) summary
      pfam03178
      Location:951 → 1326
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:133 → 695
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
    Nucleotide Protein
    Heading Accession and Version

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