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    LOC4331332 cyclin-dependent protein kinase inhibitor EL2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331332, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331332
    Gene description
    cyclin-dependent protein kinase inhibitor EL2-like
    Locus tag
    OSNPB_030107700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EL2; OsJ_09102
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    Genomic context

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    See LOC4331332 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (477699..478460)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (470250..471068)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331330 Neighboring gene uncharacterized LOC136355803 Neighboring gene UPF0548 protein At2g17695 Neighboring gene phosphoglucan phosphatase DSP4, amyloplastic Neighboring gene probable glucuronosyltransferase Os03g0107900

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses. Peres A, et al. J Biol Chem, 2007 Aug 31. PMID 17599908
    2. Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production. Minami E, et al. Plant Cell Physiol, 1996 Jun. PMID 8759920
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. EL2 encodes a new type of plant CDK inhibitor that links cell cycle progression with biotic and abiotic stress responses.
      Title: Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cyclin-dependent protein kinase inhibitor EL2
    Names
    LOC_Os03g01740

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423899.1 → NP_001410828.1  cyclin-dependent protein kinase inhibitor EL2

      Status: VALIDATED

      Source sequence(s)
      CI171086, CI269257, D64038
      UniProtKB/Swiss-Prot
      A0A0P0VS84, P93406, Q10SY2
      UniProtKB/TrEMBL
      B8ALE0, B8ALE3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      477699..478460
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10SY2.1 GenPept UniProtKB/Swiss-Prot:Q10SY2

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