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    LOC4346298 peptidyl-prolyl cis-trans isomerase CYP71 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346298, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346298
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP71
    Locus tag
    OSNPB_080557500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_A11.24-1; OJ1150_A11.24-2
    Expression
    Ubiquitous expression in mature seeds (RPKM 23.9), flower buds (RPKM 16.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28040752..28046169)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27893349..27898847)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like Neighboring gene uncharacterized LOC4346296 Neighboring gene uncharacterized LOC4346297 Neighboring gene monodehydroascorbate reductase 4, cytosolic-like Neighboring gene histidine-containing phosphotransfer protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP71
    Names
    Os08g0557500
    putative cyclophilin (70.8 kD) (cyp-15)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28040752..28046169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794450.3 → XP_015649936.1  peptidyl-prolyl cis-trans isomerase CYP71

      UniProtKB/TrEMBL
      A3BVP7, B8B9H0
      Conserved Domains (3) summary
      cd01927
      Location:499 → 646
      cyclophilin_WD40; cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the ...
      sd00039
      Location:93 → 131
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:88 → 306
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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