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    LOC4326558 uncharacterized LOC4326558 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326558, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326558
    Gene description
    uncharacterized LOC4326558
    Locus tag
    OSNPB_010641700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0510C12.6
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 10.4), roots after flowering (RPKM 9.3) and 6 other tissues See more
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    Genomic context

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    See LOC4326558 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26359053..26366374, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25777584..25782641, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase 52 Neighboring gene uncharacterized LOC4326555 Neighboring gene polyubiquitin 4-like Neighboring gene AAA-ATPase At3g50940 Neighboring gene probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum tubular network organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326558
    Names
    Os01g0641700
    P0039G05.21
    RNA polymerase sigma factor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26359053..26366374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311777.1 → XP_066167874.1  uncharacterized protein LOC4326558

      UniProtKB/TrEMBL
      B9EYA4, Q0JKX8, Q5VNW6

    2. XM_066311785.1 → XP_066167882.1  uncharacterized protein LOC4326558

      UniProtKB/TrEMBL
      B9EYA4, Q0JKX8, Q5VNW6

    3. XM_015758886.3 → XP_015614372.1  uncharacterized protein LOC4326558

      UniProtKB/TrEMBL
      B9EYA4, Q0JKX8, Q5VNW6
      Conserved Domains (1) summary
      pfam03661
      Location:77 → 227
      UPF0121; Uncharacterized protein family (UPF0121)

    4. XM_015758959.3 → XP_015614445.1  uncharacterized protein LOC4326558

      UniProtKB/TrEMBL
      B9EYA4, Q0JKX8, Q5VNW6
      Conserved Domains (1) summary
      pfam03661
      Location:77 → 227
      UPF0121; Uncharacterized protein family (UPF0121)

    5. XM_015759026.3 → XP_015614512.1  uncharacterized protein LOC4326558

      UniProtKB/TrEMBL
      B9EYA4, Q0JKX8, Q5VNW6
      Conserved Domains (1) summary
      pfam03661
      Location:77 → 227
      UPF0121; Uncharacterized protein family (UPF0121)
    Nucleotide Protein
    Heading Accession and Version

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