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    LOC4348204 probable glucuronosyltransferase GUT1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348204, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4348204
    Gene description
    probable glucuronosyltransferase GUT1
    Locus tag
    OSNPB_100180000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GUT1; OsGUT1
    Expression
    Broad expression in flowers (RPKM 95.7), flower buds (RPKM 42.4) and 5 other tissues See more
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    Genomic context

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    See LOC4348204 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (5632845..5636286, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (5487016..5490459, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene putative wall-associated receptor kinase-like 16 Neighboring gene cytochrome P450 87A3 Neighboring gene uncharacterized LOC136353631 Neighboring gene uncharacterized LOC107279223 Neighboring gene wall-associated receptor kinase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A pectin glucuronyltransferase gene is essential for intercellular attachment in the plant meristem. Iwai H, et al. Proc Natl Acad Sci U S A, 2002 Dec 10. PMID 12451175, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucuronoxylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type secondary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glucuronosyltransferase GUT1
    Names
    Glucuronoxylan glucuronosyltransferase 1
    LOC_Os10g10080
    NpGUT1 homolog
    OSJNBa0047G15.26
    OSJNBa0095J15.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403944.1 → NP_001390873.1  probable glucuronosyltransferase GUT1 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      CB656086, CB674843, CI125372, CI145553, CI641984
      UniProtKB/Swiss-Prot
      Q33AH8, Q33AI0, Q8GSQ3, Q8LNA1, Q8SB14
      UniProtKB/TrEMBL
      A0A0N7KRI5

    2. NM_001403945.1 → NP_001390874.1  probable glucuronosyltransferase GUT1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AB080694, AU031854, AU101320, CI139373, CI291550, CI664333

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      5632845..5636286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304431.1 → XP_066160528.1  probable glucuronosyltransferase GUT1 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q33AH8.2 GenPept UniProtKB/Swiss-Prot:Q33AH8

    Gene LinkOut

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