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    LOC107278782 E3 ubiquitin-protein ligase KEG [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107278782, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC107278782
    Gene description
    E3 ubiquitin-protein ligase KEG
    Locus tag
    OSNPB_050392000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC107278782 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19156600..19169425, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19055191..19067701, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene mannosylglycoprotein endo-beta-mannosidase Neighboring gene xylan glycosyltransferase MUCI21 Neighboring gene NAD-capped RNA hydrolase DXO1 Neighboring gene uncharacterized LOC4338688

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abscisic acid-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of abscisic acid-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase KEG
    Names
    Os05g0392000
    Os05g0392050

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19156600..19169425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310351.1 → XP_066166448.1  E3 ubiquitin-protein ligase KEG

      UniProtKB/TrEMBL
      B8AXZ7

    2. XM_066310352.1 → XP_066166449.1  E3 ubiquitin-protein ligase KEG

      UniProtKB/TrEMBL
      B8AXZ7

    3. XM_015783955.3 → XP_015639441.1  E3 ubiquitin-protein ligase KEG

      UniProtKB/TrEMBL
      B8AXZ7
      Conserved Domains (6) summary
      smart00220
      Location:174 → 430
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd00162
      Location:5 → 55
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd00204
      Location:512 → 638
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd14014
      Location:142 → 429
      STKc_PknB_like; Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
      pfam12796
      Location:521 → 615
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:516 → 547
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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