U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4327367 UDP-glucuronic acid decarboxylase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327367, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4327367
    Gene description
    UDP-glucuronic acid decarboxylase 1
    Locus tag
    OSNPB_010837300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    UXS-4
    Expression
    Ubiquitous expression in roots before flowering (RPKM 60.1), flowers (RPKM 49.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4327367 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36522018..36525584)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35896979..35900576)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable pectate lyase 4 Neighboring gene caffeoylshikimate esterase Neighboring gene ruvB-like protein 1 Neighboring gene uncharacterized LOC4327369

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning and expression of a UDP-glucuronic acid decarboxylase gene in rice. Suzuki K, et al. J Exp Bot, 2003 Aug. PMID 12815035
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-glucuronate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-xylose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    UDP-glucuronic acid decarboxylase 1
    Names
    Os01g0837300
    P0506B12.41-1
    P0506B12.41-2
    UDP-glucuronic acid decarboxylase-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36522018..36525584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309910.1 → XP_066166007.1  UDP-glucuronic acid decarboxylase 1 isoform X1

    2. XM_015765764.3 → XP_015621250.1  UDP-glucuronic acid decarboxylase 1 isoform X2

      UniProtKB/TrEMBL
      Q0JHX7, Q5QMG6, Q8W3J1
      Conserved Domains (1) summary
      PLN02166
      Location:1 → 410
      PLN02166; dTDP-glucose 4,6-dehydratase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials