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    LOC4336957 vacuolar-sorting receptor 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336957, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4336957
    Gene description
    vacuolar-sorting receptor 7
    Locus tag
    OSNPB_040611400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 118.7), roots after flowering (RPKM 88.5) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31511268..31515053)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31003730..31007585)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein ECERIFERUM 26-like Neighboring gene uncharacterized LOC4336956 Neighboring gene multiple RNA-binding domain-containing protein 1 Neighboring gene ent-kaurene synthase-like 3 Neighboring gene ent-kaur-16-ene synthase, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar-sorting receptor 7
    Names
    Os04g0611400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31511268..31515053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780074.3 → XP_015635560.1  vacuolar-sorting receptor 7

      UniProtKB/TrEMBL
      A0A0P0WF15, A2XXE7, Q0JA85, Q7X6L7
      Conserved Domains (3) summary
      smart00179
      Location:518 → 547
      EGF_CA; Calcium-binding EGF-like domain
      cl28883
      Location:50 → 162
      PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
      pfam12662
      Location:503 → 521
      cEGF; Complement Clr-like EGF-like

    2. XM_066309647.1 → XP_066165744.1  vacuolar-sorting receptor 7

      UniProtKB/TrEMBL
      A0A0P0WF15, A2XXE7, Q0JA85, Q7X6L7

    RNA

    1. XR_001545360.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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