U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4343443 thiamine thiazole synthase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343443, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4343443
    Gene description
    thiamine thiazole synthase, chloroplastic-like
    Locus tag
    OSNPB_070529600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 9442.7), leaves after flowering (RPKM 2622.7) and 3 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4343443 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20952291..20953779)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20724542..20726073)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene syntaxin-132 Neighboring gene isocitrate lyase-like Neighboring gene protein ALP1-like Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 8 Neighboring gene protein translation factor SUI1 homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in thiamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    thiamine thiazole synthase, chloroplastic-like
    Names
    Os07g0529600
    P0681F05.106-1
    P0681F05.106-2
    putative thiamine biosynthesis protein
    thiamine biosynthetic enzyme
    thiamine thiazole synthase 2, chloroplastic

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      20952291..20953779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791910.3 → XP_015647396.1  thiamine thiazole synthase, chloroplastic-like

      UniProtKB/Swiss-Prot
      A3BKJ8, Q0D5W8, Q7XXS4, Q8GVQ3
      UniProtKB/TrEMBL
      A2YM28
      Conserved Domains (2) summary
      PLN02661
      Location:1 → 355
      PLN02661; Putative thiazole synthesis
      pfam01946
      Location:69 → 302
      Thi4; Thi4 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials