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    LOC4340083 early nodulin-93 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340083, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4340083
    Gene description
    early nodulin-93
    Locus tag
    OSNPB_060142200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsENOD93a
    Expression
    Biased expression in milk grains (RPKM 61.3), mature seeds (RPKM 49.9) and 2 other tissues See more
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    Genomic context

    See LOC4340083 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2356768..2357874, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2199339..2200562, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340081 Neighboring gene uncharacterized LOC4340082 Neighboring gene early nodulin-93 Neighboring gene early nodulin-93

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    early nodulin-93
    Names
    Os06g0142200
    P0535G04.15-1
    early nodulin
    putative early nodulin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2356768..2357874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787717.3XP_015643203.1  early nodulin-93

      UniProtKB/TrEMBL
      A0A5S6RDN3, A2Y945, A3B8A0, O82787, Q0DEP3
      Conserved Domains (1) summary
      pfam03386
      Location:1289
      ENOD93; Early nodulin 93 ENOD93 protein