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    LOC4326249 malate dehydrogenase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326249, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326249
    Gene description
    malate dehydrogenase, mitochondrial
    Locus tag
    OSNPB_010649100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0047B08.9; OJ1316_H05.27
    Expression
    Ubiquitous expression in flower buds (RPKM 160.8), flowers (RPKM 148.1) and 6 other tissues See more
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    Genomic context

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    See LOC4326249 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26772364..26776009)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26190759..26194479)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor GTE3, chloroplastic Neighboring gene uncharacterized LOC4326248 Neighboring gene GDSL esterase/lipase At1g28600 Neighboring gene GDSL esterase/lipase At1g28600-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-malate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in malate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    malate dehydrogenase, mitochondrial
    Names
    Os01g0649100
    putative malate dehydrogenase
    putative mitochondrial malate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26772364..26776009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766118.2 → XP_015621604.1  malate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      A2WT84, A2ZW04, Q7F3S1, Q7FSL4, Q94JA2
      Conserved Domains (1) summary
      PLN00106
      Location:16 → 333
      PLN00106; malate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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