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    LOC4342320 homeobox protein knotted-1-like 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342320, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4342320
    Gene description
    homeobox protein knotted-1-like 12
    Locus tag
    OSNPB_070129700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HOS3; OSH15; Oskn3; P0483E09.2
    Expression
    Biased expression in flowers (RPKM 16.7), flower buds (RPKM 16.3) and 1 other tissue See more
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    Genomic context

    See LOC4342320 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1577172..1583295)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1565985..1572163)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pathogenesis-related protein PRMS Neighboring gene 26S proteasome non-ATPase regulatory subunit 14 homolog Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General protein information

    Preferred Names
    homeobox protein knotted-1-like 12
    Names
    Homeobox protein HOS3
    Homeobox protein OSH15
    Homeobox protein knotted-1-like 3
    KNOX class 1 homeodomain protein
    KNOX class homeodomain protein
    LOC_Os07g03770
    OSJNBa0088O14.22

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402992.1NP_001389921.1  homeobox protein knotted-1-like 12

      Status: VALIDATED

      Source sequence(s)
      AB007623, CI279055, CI775917, FJ940208
      UniProtKB/Swiss-Prot
      A2YHU1, O65034, O80416, Q84ZI8, Q9SXM6
      UniProtKB/TrEMBL
      A0A8J8XBX6, B8B756, B9FVB7, D6BV19

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1577172..1583295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)