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    LOC4347769 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347769, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347769
    Gene description
    probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9
    Locus tag
    OSNPB_090547500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOGL9
    Expression
    Biased expression in leaves after flowering (RPKM 24.7), roots before flowering (RPKM 24.2) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26086454..26088788)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21642712..21644833)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351907 Neighboring gene protein ALTERED PHOSPHATE STARVATION RESPONSE 1 Neighboring gene uncharacterized LOC136351653 Neighboring gene F-box/FBD/LRR-repeat protein At5g22660

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1. Jang SJ, et al. Mol Cells, 2012 Sep. PMID 22965749, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The mutation of lysine decarboxylase-like 1 protein conferred an oxidative stress-tolerant phenotype.
      Title: Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9
    Names
    LOC_Os09g37540
    OSJNBa0038K02.28
    Protein LONELY GUY-like 9
    NP_001409862.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422933.1 → NP_001409862.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9

      Status: VALIDATED

      Source sequence(s)
      AK062595, AP014965, CI251858, CI261278, CI295549
      UniProtKB/Swiss-Prot
      A0A0P0XR83, B7E7M8, Q651P9
      UniProtKB/TrEMBL
      A2Z3Q9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26086454..26088788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B7E7M8.1 GenPept UniProtKB/Swiss-Prot:B7E7M8

    Gene LinkOut

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