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    LOC4339308 uncharacterized LOC4339308 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339308, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339308
    Gene description
    uncharacterized LOC4339308
    Locus tag
    OSNPB_050514400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 1.1), flower buds (RPKM 0.6) and 2 other tissues See more
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    Genomic context

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    See LOC4339308 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (25619633..25621735, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25503076..25505225, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 19-like Neighboring gene tubby-like F-box protein 9 Neighboring gene interactor of constitutive active ROPs 1 Neighboring gene gibberellin 2-beta-dioxygenase 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4339308
    Names
    Os05g0514400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      25619633..25621735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782970.3 → XP_015638456.1  uncharacterized protein LOC4339308

      UniProtKB/TrEMBL
      A0A0P0WPE7, B8AZZ0, Q68Y47
      Conserved Domains (1) summary
      pfam05097
      Location:36 → 263
      DUF688; Protein of unknown function (DUF688)

    2. XM_015782969.3 → XP_015638455.1  uncharacterized protein LOC4339308

      UniProtKB/TrEMBL
      A0A0P0WPE7, B8AZZ0, Q68Y47
      Conserved Domains (1) summary
      pfam05097
      Location:36 → 263
      DUF688; Protein of unknown function (DUF688)
    Nucleotide Protein
    Heading Accession and Version

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