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    LOC4349769 stem-specific protein TSJT1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349769, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349769
    Gene description
    stem-specific protein TSJT1
    Locus tag
    OSNPB_110147800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 478.2), flower buds (RPKM 427.1) and 6 other tissues See more
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    Genomic context

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    See LOC4349769 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2249462..2252930, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2204275..2207792, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268886 Neighboring gene heavy metal-associated isoprenylated plant protein 33 Neighboring gene uncharacterized LOC107279449 Neighboring gene cation/calcium exchanger 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    stem-specific protein TSJT1; uncharacterized protein LOC4349769
    Names
    Os11g0147800
    stem specific protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2249462..2252930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761776.3 → XP_015617262.1  stem-specific protein TSJT1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y5B5, A2ZBF1, A3C8M2, Q0IUM6, Q2RAK8
      Conserved Domains (1) summary
      pfam12481
      Location:2 → 226
      DUF3700; Aluminium induced protein

    2. XM_066305362.1 → XP_066161459.1  uncharacterized protein LOC4349769 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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