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    LOC4342767 putative F-box protein At3g58860 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342767, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342767
    Gene description
    putative F-box protein At3g58860
    Locus tag
    OSNPB_070229100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 3.7), roots after flowering (RPKM 3.6) and 6 other tissues See more
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    Genomic context

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    See LOC4342767 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (7277811..7281555, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (7197961..7202001, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357359 Neighboring gene putative F-box/FBD/LRR-repeat protein At4g03220 Neighboring gene F-box/LRR-repeat protein 25 Neighboring gene transcription elongation factor TFIIS

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative F-box protein At3g58860
    Names
    F-box domain-containing protein
    OSJNBa0016A21.117
    Os07g0229100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      7277811..7281555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789746.3 → XP_015645232.1  putative F-box protein At3g58860

      UniProtKB/TrEMBL
      B9FW95, Q0D7N4, Q8H2K3
      Conserved Domains (2) summary
      sd00034
      Location:251 → 280
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:107 → 147
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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