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    LOC4339677 ketol-acid reductoisomerase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339677, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4339677
    Gene description
    ketol-acid reductoisomerase, chloroplastic-like
    Locus tag
    OSNPB_050573700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1735_C10.18
    Expression
    Ubiquitous expression in flower buds (RPKM 163.1), flowers (RPKM 134.0) and 6 other tissues See more
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    Genomic context

    See LOC4339677 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28764538..28767959, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28579254..28582614, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit B-4-like Neighboring gene uncharacterized LOC107277099 Neighboring gene U-box domain-containing protein 7 Neighboring gene protein INCREASED PETAL GROWTH ANISOTROPY 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ketol-acid reductoisomerase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in isoleucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in valine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    ketol-acid reductoisomerase (NADP(+))
    Names
    Acetohydroxy-acid reductoisomerase
    Alpha-keto-beta-hydroxylacyl reductoisomerase
    LOC_Os05g49800
    Protein KARI
    ketol-acid reductoisomerase, chloroplastic
    NP_001407814.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420885.1NP_001407814.1  ketol-acid reductoisomerase (NADP(+))

      Status: VALIDATED

      Source sequence(s)
      CB641921, CB641922, CI519375, CI564254
      UniProtKB/Swiss-Prot
      A0A0P0WRB0, Q65XK0
      UniProtKB/TrEMBL
      B8AWV4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      28764538..28767959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)