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    LOC4324394 beclin-1-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324394, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4324394
    Gene description
    beclin-1-like protein
    Locus tag
    OSNPB_010681400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324394 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28658749..28664460, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28070673..28076423, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene dynamin-related protein 5A Neighboring gene long chain acyl-CoA synthetase 4 Neighboring gene uncharacterized LOC4324395 Neighboring gene uncharacterized LOC4324396

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to nitrogen starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of phosphatidylinositol 3-kinase complex, class III, type I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of phosphatidylinositol 3-kinase complex, class III, type II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beclin-1-like protein
    Names
    Os01g0681400
    P0019E03.22
    beclin 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28658749..28664460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767222.3 → XP_015622708.1  beclin-1-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8J8XZB4, A3AG82, B9EYM1, C7IZV9, Q0JKD4, Q10NU3
      Conserved Domains (2) summary
      pfam04111
      Location:307 → 478
      APG6; Autophagy protein Apg6
      pfam17675
      Location:173 → 301
      APG6_N; Apg6 coiled-coil region

    2. XM_015767213.3 → XP_015622699.1  beclin-1-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XZB4, A3AG82, C7IZV9, Q10NU3
      Conserved Domains (1) summary
      pfam04111
      Location:173 → 485
      APG6; Autophagy protein Apg6
    Nucleotide Protein
    Heading Accession and Version

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