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    LOC9271299 protein TPX2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271299, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9271299
    Gene description
    protein TPX2
    Locus tag
    OSNPB_070507200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 5.6), flowers (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    See LOC9271299 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19479291..19484404, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19252896..19258069, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278277 Neighboring gene probable protein phosphatase 2C 62 Neighboring gene uncharacterized LOC4343333 Neighboring gene protein MAIN-LIKE 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TPX2
    Names
    OSJNBb0062D12.128
    Os07g0507200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19479291..19484404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791213.3 → XP_015646699.1  protein TPX2 isoform X2

      UniProtKB/TrEMBL
      A2YLN7
      Conserved Domains (2) summary
      pfam06886
      Location:695 → 775
      TPX2; Targeting protein for Xklp2 (TPX2)
      pfam12214
      Location:366 → 534
      TPX2_importin; Cell cycle regulated microtubule associated protein

    2. XM_015791212.3 → XP_015646698.1  protein TPX2 isoform X1

      UniProtKB/TrEMBL
      A2YLN7, B9FXF0
      Conserved Domains (2) summary
      pfam06886
      Location:696 → 776
      TPX2; Targeting protein for Xklp2 (TPX2)
      pfam12214
      Location:367 → 535
      TPX2_importin; Cell cycle regulated microtubule associated protein
    Nucleotide Protein
    Heading Accession and Version

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