LOC4333866 DEAD-box ATP-dependent RNA helicase 21-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4333866
Gene description: DEAD-box ATP-dependent RNA helicase 21-like
Locus tag: OSNPB_030708600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsJ_12293
Expression: Ubiquitous expression in leaves after flowering (RPKM 18.2), flower buds (RPKM 17.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (29440864..29445174, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (28567076..28571315, complement)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: dEAD-box ATP-dependent RNA helicase 21

Names: DEAD-box ATP-dependent RNA helicase 21; LOC_Os03g50090

NP_001405514.1

EC 3.6.4.13

XP_015631548.1

EC 3.6.4.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001418585.1 → NP_001405514.1 dEAD-box ATP-dependent RNA helicase 21

Status: VALIDATED

Source sequence(s)

AK069658, AP014959, AU078612, CI135267, CI665700

UniProtKB/Swiss-Prot

B7EG14, Q53RK8

UniProtKB/TrEMBL

A2XL76

RNA

NR_184783.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AK069658, AP014959, CI120334, CI135267, CI528506, CI665700
NR_184784.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AK069658, AP014959, CI135267, CI272079, CI665700

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089037.1 Reference ASM3414082v1 Primary Assembly

Range

29440864..29445174 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015776062.3 → XP_015631548.1 dEAD-box ATP-dependent RNA helicase 21 isoform X1

UniProtKB/Swiss-Prot

B7EG14, Q53RK8

UniProtKB/TrEMBL

A2XL76

Conserved Domains (3) summary

PRK01297
Location:230 → 682

PRK01297; ATP-dependent RNA helicase RhlB; Provisional

cd00079
Location:553 → 681

HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...

cd00268
Location:317 → 542

DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...