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    LOC4329997 uncharacterized LOC4329997 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329997, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329997
    Gene description
    uncharacterized LOC4329997
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1212_C01.5; OJ1014_H03.19
    Expression
    Ubiquitous expression in flower buds (RPKM 21.0), leaves after flowering (RPKM 15.9) and 6 other tissues See more
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    Genomic context

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    See LOC4329997 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25043699..25046195)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24560911..24563554)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene polyribonucleotide nucleotidyltransferase 2, mitochondrial-like Neighboring gene uncharacterized LOC9271277 Neighboring gene small nucleolar RNA SNORD25 Neighboring gene small nucleolar RNA snoR136

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329997
    Names
    39S ribosomal protein L41-A, mitochondrial
    60S ribosomal protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001377487.1 → NP_001364416.1  uncharacterized protein LOC4329997

      Status: VALIDATED

      Source sequence(s)
      AU197221, CI403942, CI669468
      Conserved Domains (1) summary
      pfam09809
      Location:25 → 77
      MRP-L27; Mitochondrial ribosomal protein L27

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25043699..25046195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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