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    LOC4324441 60S ribosomal protein L30-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324441, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324441
    Gene description
    60S ribosomal protein L30-like
    Locus tag
    OSNPB_010276000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPL30; OsJ_01280
    Expression
    Ubiquitous expression in mature seeds (RPKM 284.4), flower buds (RPKM 254.7) and 6 other tissues See more
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    Genomic context

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    See LOC4324441 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9671024..9674323, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9658135..9661326, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324440 Neighboring gene small nucleolar RNA Z102/R77 Neighboring gene small nucleolar RNA Z101 Neighboring gene small nucleolar RNA Z103 Neighboring gene small nucleolar RNA Z103 Neighboring gene small nucleolar RNA Z103 Neighboring gene isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial Neighboring gene mitochondrial import receptor subunit TOM40-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL30
    Names
    LOC_Os01g16890
    P0038F12.17
    putative ribosomal protein L30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406114.1 → NP_001393043.1  large ribosomal subunit protein eL30

      Status: VALIDATED

      Source sequence(s)
      CF301464, CF313037
      UniProtKB/Swiss-Prot
      Q0JNP0, Q9SDG6
      UniProtKB/TrEMBL
      B8ACI7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9671024..9674323 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SDG6.1 GenPept UniProtKB/Swiss-Prot:Q9SDG6

    Gene LinkOut

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