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    LOC4346982 protein trichome birefringence-like 14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346982, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4346982
    Gene description
    protein trichome birefringence-like 14
    Locus tag
    OSNPB_090397400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1655_B12.16
    Expression
    Ubiquitous expression in flowers (RPKM 9.0), mature seeds (RPKM 7.2) and 6 other tissues See more
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    Genomic context

    See LOC4346982 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18249663..18252899, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13880648..13883903, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346980 Neighboring gene alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 Neighboring gene uncharacterized LOC4346983 Neighboring gene cleavage and polyadenylation specificity factor subunit 3-II

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    protein trichome birefringence-like 14
    Names
    Os09g0397400
    leaf senescence protein-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18249663..18252899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795848.3XP_015651334.1  protein trichome birefringence-like 14

      UniProtKB/TrEMBL
      A0A0P0XN85, Q0J225, Q6ERD8
      Conserved Domains (2) summary
      pfam13839
      Location:127414
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:72125
      PMR5N; PMR5 N terminal Domain