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    LOC4347050 uncharacterized LOC4347050 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347050, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347050
    Gene description
    uncharacterized LOC4347050
    Locus tag
    OSNPB_090413600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 73.8), flower buds (RPKM 61.7) and 6 other tissues See more
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    Genomic context

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    See LOC4347050 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19072433..19077149, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14694432..14699068, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene large ribosomal subunit protein eL34 Neighboring gene uncharacterized LOC4347051 Neighboring gene uncharacterized LOC112936403

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347050
    Names
    Os09g0413600
    P0643D11.22-1
    P0643D11.22-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      19072433..19077149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756433.3 → XP_015611919.1  uncharacterized protein LOC4347050

      UniProtKB/TrEMBL
      A3BYT0, Q0J1T6, Q6ES34
      Conserved Domains (2) summary
      pfam07891
      Location:891 → 1135
      DUF1666; Protein of unknown function (DUF1666)
      NF033845
      Location:438 → 710
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    Nucleotide Protein
    Heading Accession and Version

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