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    LOC4348893 probable serine/threonine protein phosphatase 2A regulatory subunit B''delta [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348893, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348893
    Gene description
    probable serine/threonine protein phosphatase 2A regulatory subunit B''delta
    Locus tag
    OSNPB_100476600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 35.6), leaves before flowering (RPKM 35.6) and 6 other tissues See more
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    Genomic context

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    See LOC4348893 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (18422932..18430780)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17755777..17763650)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348889 Neighboring gene uncharacterized LOC4348890 Neighboring gene vacuolar protein sorting-associated protein 2 homolog 3 Neighboring gene uncharacterized LOC4348892 Neighboring gene GDSL esterase/lipase At5g62930 Neighboring gene transfer RNA isoleucine (anticodon AAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine protein phosphatase 2A regulatory subunit B''delta
    Names
    Os10g0476600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      18422932..18430780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759125.3 → XP_015614611.1  probable serine/threonine protein phosphatase 2A regulatory subunit B''delta

      UniProtKB/TrEMBL
      A0A8J8XAJ8, B9G688, Q0IX01, Q7XDE0, Q9AUZ8
      Conserved Domains (1) summary
      cd21504
      Location:209 → 482
      PPP2R3A_B-like; serine/threonine protein phosphatase 2A regulatory subunit B" alpha and beta subunits, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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