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    LOC4331050 26S proteasome regulatory subunit 6A homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331050, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331050
    Gene description
    26S proteasome regulatory subunit 6A homolog
    Locus tag
    OSNPB_020803700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TBP1; TBP-1; OsRPT5a
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 88.6), roots after flowering (RPKM 84.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34762461..34766420, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34266066..34269936, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene vesicle-associated membrane protein 711 Neighboring gene putative UDP-rhamnose:rhamnosyltransferase 1 Neighboring gene uncharacterized LOC136355487 Neighboring gene uncharacterized LOC112937868

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome regulatory subunit 6A homolog
    Names
    26S protease regulatory subunit 6A homolog
    26S proteasome regulatory particle triple-A ATPase subunit5a
    LOC_Os02g56000
    P0689B12.30
    P0689B12.30-2
    Tat-binding protein homolog 1
    putative 26S proteasome regulatory particle triple-A ATPase subunit5a
    rice homologue of Tat binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401995.1 → NP_001388924.1  26S proteasome regulatory subunit 6A homolog

      Status: VALIDATED

      Source sequence(s)
      CB679656, CB679657, CF310207, CI332290
      UniProtKB/Swiss-Prot
      P46465, Q0DWP6, Q69SI9, Q8W421
      UniProtKB/TrEMBL
      A2XAQ0, A3ACE6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34762461..34766420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P46465.2 GenPept UniProtKB/Swiss-Prot:P46465

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials