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    LOC4344766 uncharacterized LOC4344766 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344766, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344766
    Gene description
    uncharacterized LOC4344766
    Locus tag
    OSNPB_080169800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 14.6), mature seeds (RPKM 13.1) and 6 other tissues See more
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    Genomic context

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    See LOC4344766 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4125913..4136145)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4078674..4088967)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344764 Neighboring gene uncharacterized LOC4344765 Neighboring gene disease resistance protein PIK6-NP Neighboring gene disease resistance protein PIK6-NP-like Neighboring gene uncharacterized LOC136351480 Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344766
    Names
    Os08g0169800
    P0458D06.22
    P0462E11.46
    haloacid dehalogenase-like hydrolase domain-containing protein 3
    haloacid dehalogenase-like hydrolase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      4125913..4136145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795576.3 → XP_015651062.1  uncharacterized protein LOC4344766

      UniProtKB/TrEMBL
      A3BQ20, B8BB56, Q6Z026, Q6ZCM7
      Conserved Domains (1) summary
      TIGR02252
      Location:61 → 250
      DREG-2; REG-2-like, HAD superfamily (subfamily IA) hydrolase

    2. XM_015795578.3 → XP_015651064.1  uncharacterized protein LOC4344766

      UniProtKB/TrEMBL
      A3BQ20, B8BB56, Q6Z026, Q6ZCM7
      Conserved Domains (1) summary
      TIGR02252
      Location:61 → 250
      DREG-2; REG-2-like, HAD superfamily (subfamily IA) hydrolase

    3. XM_066303548.1 → XP_066159645.1  uncharacterized protein LOC4344766

      UniProtKB/TrEMBL
      A3BQ20, B8BB56, Q6Z026, Q6ZCM7

    RNA

    1. XR_010734537.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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