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    LOC4346978 vacuolar iron transporter 1.2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346978, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4346978
    Gene description
    vacuolar iron transporter 1.2-like
    Locus tag
    OSNPB_090396900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    VIT2; OsVIT2; VIT1.2; OsVIT1.2; OsJ_29262; OJ1655_B12.5
    Expression
    Biased expression in flower buds (RPKM 89.8), milk grains (RPKM 13.8) and 1 other tissue See more
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    Genomic context

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    See LOC4346978 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13831851..13833641)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene pyrrolidone-carboxylate peptidase Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC4346979 Neighboring gene uncharacterized LOC4346980

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. Zhang Y, et al. Plant J, 2012 Nov. PMID 22731699
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsVIT1 and OsVIT2 are highly expressed in rice flag leaves and function to transport Fe and Zn into vacuoles across the tonoplast.
      Title: Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables iron ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular manganese ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular sequestering of iron ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar iron transporter 1.2; vacuolar iron transporter 2
    Names
    LOC_Os09g23300
    Vacuolar iron transporter 2
    integral membrane-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422758.1 → NP_001409687.1  vacuolar iron transporter 2

      Status: VALIDATED

      Source sequence(s)
      AP014965, CI143313, CI190092
      UniProtKB/Swiss-Prot
      A0A0P0XMS4, A3BYK3, Q6ERE5
      UniProtKB/TrEMBL
      A2Z104

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13831851..13833641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755389.2 → XP_015610875.1  vacuolar iron transporter 1.2

      UniProtKB/Swiss-Prot
      Q6ERE5
      Conserved Domains (1) summary
      cd02435
      Location:19 → 243
      CCC1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ERE5.2 GenPept UniProtKB/Swiss-Prot:Q6ERE5

    Gene LinkOut

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