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    LOC4346288 peroxisomal ATPase PEX1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346288, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346288
    Gene description
    peroxisomal ATPase PEX1
    Locus tag
    OSNPB_080556500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_A11.13
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    Genomic context

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    See LOC4346288 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27996187..28003514)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27848939..27856233)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene accelerated cell death 11 Neighboring gene probable protein S-acyltransferase 19 Neighboring gene NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B Neighboring gene phosphatidylinositol-3-phosphatase myotubularin-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth. Ke S, et al. Plant Mol Biol, 2019 May. PMID 30840202
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. This study uncovers a causative effect between the expression of OsPEX1 and lignin deposition.
      Title: Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisomal ATPase PEX1
    Names
    Os08g0556500
    Os08g0556550
    peroxisome biogenesis protein 1
    putative peroxisome biogenesis protein PEX1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27996187..28003514
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795087.3 → XP_015650573.2  peroxisomal ATPase PEX1

    Nucleotide Protein
    Heading Accession and Version

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