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    LOC4338699 uncharacterized LOC4338699 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338699, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4338699
    Gene description
    uncharacterized LOC4338699
    Locus tag
    OSNPB_050394900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 19.0), leaves before flowering (RPKM 15.0) and 6 other tissues See more
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    Genomic context

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    See LOC4338699 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19319057..19324221, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19217188..19221979, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene small polypeptide DEVIL 21-like Neighboring gene uncharacterized LOC136356776 Neighboring gene uncharacterized LOC136356512 Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A Neighboring gene DUF21 domain-containing protein At4g14240 Neighboring gene two-component response regulator ORR27-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    WEB family protein At4g27595, chloroplastic; uncharacterized protein LOC4338699
    Names
    Os05g0394900
    probable serine/threonine-protein kinase kinX

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19319057..19324221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310521.1 → XP_066166618.1  WEB family protein At4g27595, chloroplastic isoform X3

    2. XM_066310523.1 → XP_066166620.1  uncharacterized protein LOC4338699 isoform X5

    3. XM_066310522.1 → XP_066166619.1  uncharacterized protein LOC4338699 isoform X4

    4. XM_015784571.3 → XP_015640057.1  WEB family protein At4g27595, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9FPG4
      Conserved Domains (1) summary
      COG4372
      Location:223 → 412
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

    5. XM_026025566.2 → XP_025881351.1  WEB family protein At4g27595, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9FPG4
      Conserved Domains (1) summary
      cl26472
      Location:228 → 417
      DUF3084; Protein of unknown function (DUF3084)
    Nucleotide Protein
    Heading Accession and Version

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