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    LOC4328555 uncharacterized LOC4328555 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328555, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328555
    Gene description
    uncharacterized LOC4328555
    Locus tag
    OSNPB_020188500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1145_F01.17
    Expression
    Biased expression in flower buds (RPKM 30.6) and roots before flowering (RPKM 1.7) See more
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    Genomic context

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    See LOC4328555 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4918514..4920894, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4908079..4911370, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cinnamyl alcohol dehydrogenase 2-like Neighboring gene gallate 1-beta-glucosyltransferase 84A24 Neighboring gene uncharacterized LOC112937966 Neighboring gene F-box/FBD/LRR-repeat protein At1g78750

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328555
    Names
    Os02g0188500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4918514..4920894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768537.3 → XP_015624023.1  uncharacterized protein LOC4328555 isoform X2

      UniProtKB/TrEMBL
      Q0E389, Q6ZHR8
      Conserved Domains (1) summary
      cd17058
      Location:117 → 200
      Ubl_SNRNP25; ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 (SNRNP25) and similar proteins

    2. XM_015768536.3 → XP_015624022.1  uncharacterized protein LOC4328555 isoform X1

      Conserved Domains (1) summary
      cd01769
      Location:119 → 199
      UBL; Ubiquitin-like domain of UBL
    Nucleotide Protein
    Heading Accession and Version

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